ncibtep@nih.gov

Bioinformatics Training and Education Program

Training: Access GEO, SRA, ArrayExpress, TCGA, GTEx and more with Qiagen IPA Land Explorer

Training: Access GEO, SRA, ArrayExpress, TCGA, GTEx and more with Qiagen IPA Land Explorer

 When: Apr. 20th, 2022 11:00 am - 12:00 pm

To Know

Where:
Online Webinar
Organizer:
BTEP
Presented By:
Shawn Prince (Qiagen)
This class has ended.

About this Class

Qiagen IPA Land Explorer links out to the OmicSoft “Land” collections of disease-relevant datasets (>500,000 samples) directly from within IPA to:
  • Explore sample-level data expression, variation, fusions, and more from 500,000+ datasets
  • Explore full differential expression results from 100,000+ disease-focused statistical comparisons
  • Quickly create survival plots from thousands of samples, grouped on metadata or ‘Omics data
  • Export ‘Omics and comparison data for downstream analytics
Land Explorer can help you answer questions like below and more
  • How is a gene/protein expressed across different diseases, tissues, cell type and other groups of interest?
  • How does expression of target gene correlate with expression of other genes?
  • For a gene what mutation, CNV and fusion information can I get from TCGA?
  • Is the survival of cohorts different if they have high vs low expression of a gene or mutant vs wild type allele for a gene?
  • Which genes are expressed in responders vs non-responders for a drug treatment?
Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=m6a4ca1b5d634700c3ad9c7e6c1b45b72