ncibtep@nih.gov

Bioinformatics Training and Education Program

Hands-on - Gene Expression using Microarrays with Partek Genomics Suite and Partek Pathway - Repeat Class

Hands-on - Gene Expression using Microarrays with Partek Genomics Suite and Partek Pathway - Repeat Class

 When: Nov. 14th, 2012 9:00 am - 12:00 pm

To Know

Where:
In-Person
Organizer:
BTEP
This class has ended.

About this Class

 

This is a repeat class for those who couldn't make it into the class on October 9th
 
Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Partek Pathway. As we walk though hands-on analysis of a cancer dataset, you will learn the principles of experimental design, batch correction, statistics, and how to extract biological meaning from the results using tools geneset analyses and pathways.

  • Gene Expression Analysis with Affymetrix (cancer dataset)
  • Good experimental design practices
  • Import CEL files/normalization options
  • Describing sample groups
  • Batch correction
  • Detecting differentially expressed genes/creating a gene list
  • Hierarchical Clustering and other visualizations
  • GO Analysis
  • Pathway Enrichment
  • GeneSet analysis (including Pathway ANOVA)
  • Integration with microRNA 

Course Materials: