ncibtep@nih.gov

Bioinformatics Training and Education Program

BTEP: Single Cell RNA Seq Analysis with Partek Flow

BTEP: Single Cell RNA Seq Analysis with Partek Flow

 When: Aug. 28th, 2019 1:00 pm - 5:00 pm

To Know

Where:
Bldg 10 FAES room 4 (B1C205)
Organizer:
BTEP
Presented By:
Xiaowen Wang (Partek)
This class has ended.

About this Class

Here is the handout used for todays Single Cell RNA Seq analysis class: PartekFlowSingleCellRNA-SeqTrainingHandout_August2019 Attention: This class is limited to 28 people due to the size of the room. There is another Single Cell Rna-Seq class on Oct 23 if you can't make this one. Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow Please bring your computer for this hands-on training. If you need to borrow a computer please email ncibtep@nih.gov Abstract: Students will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow: - Import data - Filter cells using interactive QA/QC charts - Filter and normalize Single Cell RNA-Seq data - Visualize cell populations using the interactive 3D t-SNE plot - Overlay gene expression and pathway signatures on the 3D t-SNE plot - Select and classify cells on the 3D t-SNE plot - Detect differentially expressed genes - Filter a gene list - Identify enriched KEGG pathway and/or GO terms - Visualize cell-level results using heat maps, volcano plots, and violin plots   If you can't attend in person, WebEx will be provided.
Meeting number (access code): 731 584 771
Meeting password: fR3RPGP?
Wednesday, August 28, 2019
1:00 pm  |  (UTC-05:00) Eastern Time (US & Canada)  |  3 hrs
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