Questions › Category: ChIP-Seq Data Analysis › Comparing to outside sources of data: What is a good website to check for transcription factor binding motifs and how they regulate expression?
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stonelakeak@nih.gov Staff asked 3 years ago

What is a good website to check for transcription factor binding motifs and how they regulate expression?

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stonelakeak@nih.gov Staff answered 3 years ago

Genomatix [https://www.genomatix.de/] suite has tools to explore TF binding motifs and target predictions. This package requires a license that is available for NCI/CCR. Another manually curated human/mouse transcriptional regulatory network resource is TRRUST [https://www.grnpedia.org/trrust/]. – answered by Tovah Markowitz, Paul Schaughency, Vishal Koparde.