mehtam5@nih.gov asked 9 months ago
Update: found the problem – I had not activated bioinfo in the new terminal window! Its all working now. 🙂
Leaving this question here in case anybody else is facing the same issue.
Original question – Most of the commands described in the data compression and subsequent chapters are not working – On trying commands like efetch, bgzip, infoseq, seqkit, bioawk etc, I get ‘command not found’. Is there any additional the needs to be installed for these?
2 Answers
stonelakeak@nih.gov Staff answered 9 months ago
Make sure the miniconda install goes as described – that should fix this problem.
tillodc@nih.gov Staff answered 9 months ago
Always run the command “conda activate bioinfo” in your terminal window before working on any of the exercises described in the textbook or class.
Please login to submit your answer
