The CLC Genomics Workbench is the client software for the CLC Genomics Server.
Features for the Genomics Workbench are described below:
- Analyzing and visualizing Next Generation Sequencing data, incorporates cutting-edge technology and algorithms, while also supporting and integrating with the rest of your typical NGS workflow.
- Read mapping of Sanger, 454, Illumina Genome Analyzer and SOLiD sequencing data
- De novo assembly of genomes of any size (only limited by RAM available)
- Color space mapping
- Advanced visualization, scrolling, and zooming tools
- SNP detection using advanced quality filtering
- Support for multiplexing with DNA barcoding
- RNA-seq including support for paired data and transcript-level expressio
- Small RNA analysis
- Expression profiling by tags
- EST library construction
- Advanced visualization, scrolling, and zooming tools
- Gene expression analysis
- Chromatin Immuno-Precipitation sequencing (ChIP-seq) analysis
- Peak finding and peak refinement
- Graph and table of background distribution and false discovery rate
- Peak table and annotations
Similar feature and functionality on Partek Genomics Suite, Partek Flow, and Qlucore.
