BTEP
Bioinformatics Training and Education Program, CCR, NCI
ncibtep@nih.gov
Events by this organizer
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Artificial Intelligence / Machine Learning
Bioinformatics Software
Bulk RNA-Seq
Cancer
Cloud
Data Management
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Data Science
Flow Cytometry
Genomics
Image Analysis
Microbiome
NCI Genomic Data Commons
NIDAP
NIH High Performance Unix Cluster Biowulf
Omics
Pathway Analysis
Programming
Proteomics
Sequencing Technologies
Single Cell RNA SEQ
Single Cell Technologies
Spatial Transcriptomics
Statistics
Transcriptomics
Variant Analysis
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BTEP
BYOB
CBIIT
CCR Single Cell Analysis and Sequencing Facilities
CDSL
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Earl Stadtman Investigator Program
FNL Science and Technology Group
Frederick Faculty Seminar Series
HPC Biowulf
Laboratory of Cell Biology (LCB)
Molecular Discovery Seminar Series
NCI
NCI and the Society for Immunotherapy of Cancer (SITC)
NCI CCR Liver Cancer Program (LCP)
NCI Containers and Workflows Interest Group
NCI Data Science Learning Exchange
NCI Genomic Data Commons
NCI SS/SC
NHGRI
NHLBI
NHLBI Proteomics Core
NIA
NIA Artificial Intelligence Lecture Series
NIAID
NICHD
NIDA
NIDCR
NIH
NIH HPC
NIH Metabolomics Scientific Interest Group
NIH Office of Data Science Strategy (ODSS)
NIH STRIDES
NIH Training Library
NIH.AI
Office of Cancer Clinical Proteomics Research
Qlucore
Scientific Library at Frederick
Single Cell Users Group
Systems Biology Interest Group
The NIH Metabolomics Interest Group
Past & Future Events
All
Only Past Events
Only Future Events
may
Event Details
In lesson 5 of the Data Visualization with R series we will introduce the heatmap and dendrogram as tools for visualizing clusters in data.
Event Details
In lesson 5 of the Data Visualization with R series we will introduce the heatmap and dendrogram as tools for visualizing clusters in data.
Meeting Link
Meeting LinkTime
(Tuesday) 1:00 pm - 2:00 pm eastern
Location
Online
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
Event Details
In lesson 5 of the Data Visualization with R series we will introduce the heatmap and dendrogram as tools for visualizing clusters in data.
Event Details
In lesson 5 of the Data Visualization with R series we will introduce the heatmap and dendrogram as tools for visualizing clusters in data.
Meeting Link
Meeting LinkTime
(Thursday) 1:00 pm - 2:00 pm eastern
Location
Online
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
Event Details
In lesson 6 of the Data Visualization with R series we will focus on generating sub plots and multi plot figure panels using ggplot2 associated packages. This will allow us
Event Details
In lesson 6 of the Data Visualization with R series we will focus on generating sub plots and multi plot figure panels using ggplot2 associated packages. This will allow us to meet any figure limitations that scientific journals may have.
Meeting Link
Meeting LinkTime
(Tuesday) 1:00 pm - 2:00 pm eastern
Location
Online
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
Event Details
Many new studies include RNA sequencing data. In this webinar we will go through the process of downloading and importing SRA data using the SRA toolkit, how to use an
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Event Details
Many new studies include RNA sequencing data. In this webinar we will go through the process of downloading and importing SRA data using the SRA toolkit, how to use an aligner to convert fastq files into BAM files and then how to import and normalize the BAM files in Omics Explorer. We will also show how you can download GEO soft files, TCGA mRNA data from GDAC and import 10X Genomics Cellranger data.
- Meeting link:
- https://cbiit.webex.com/cbiit/j.php?MTID=m1ab9795e00f76ba4641bf19f662d54a9
- Meeting number:
- 2311 589 3124
- Password:
- VKwJ4MRg4?7
- Host key:
- 372928
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
-
Dial 23115893124@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
-
1-650-479-3207 Call-in number (US/Canada)Access code: 2311 589 3124Host PIN: 5225
Register Here
Register HereTime
(Wednesday) 11:00 am - 12:00 pm
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
Event Details
In lesson 6 of the Data Visualization with R series we will focus on generating sub plots and multi plot figure panels using ggplot2 associated packages. This will allow us
Event Details
In lesson 6 of the Data Visualization with R series we will focus on generating sub plots and multi plot figure panels using ggplot2 associated packages. This will allow us to meet any figure limitations that scientific journals may have.
Meeting Link
Meeting LinkTime
(Thursday) 1:00 pm - 2:00 pm eastern
Location
Online
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
Event Details
Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals – Bulk and Single Cell Data The increasing use of genomic technologies, such as RNA-Seq and single cell RNA-Seq, to
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Event Details
Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals – Bulk and Single Cell Data
The increasing use of genomic technologies, such as RNA-Seq and single cell RNA-Seq, to assess gene expression patterns has led to an unprecedented amount of data. For many, the size and complexity of these data sets make it challenging to see the biological signals. But not anymore.
The visualization tools in Partek® Flow® provide the flexibility needed to display gene expression results ready for publication. Our powerful, interactive plots also facilitate novel discovery and provide fast and accurate QAQC. Together with the easy-to-use point and click interface, Partek Flow allows you to answer more questions and move forward with your research.
In this webinar, you will learn how to visualize gene expression data using:
- Feature distribution plots
- Sample correlation plots
- Volcano plots
- Chromosome view
- Dot plots
- Violin plots
- Hierarchical clustering
- PCA
- t-SNE
- Customizable scatterplots
WebEx link: https://cbiit.webex.com/cbiit/j.php?MTID=m634db94c7c42f1eb6dcf1850c27bd2c6
- Meeting number:
- 2310 750 5275
- Password:
- a73JRXKwm?6
- Host key:
- 148776
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
-
Dial 23107505275@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
-
1-650-479-3207 Call-in number (US/Canada)Access code: 2310 750 5275Host PIN: 5225
Register Here
Register HereTime
(Wednesday) 11:00 am - 12:00 pm
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
june
Event Details
This webinar will discuss the various single cell RNA-Seq data formats and how to process them with Partek Flow. You will learn about: Single cell data file formats .h5, .fastq, .tsv,
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Event Details
This webinar will discuss the various single cell RNA-Seq data formats and how to process them with Partek Flow.
You will learn about:
- Single cell data file formats .h5, .fastq, .tsv, .mtx, .bcl
- Trimming tags
- Alignment
- Deduplicating UMI
- Filtering barcodes (cells)
- Knee plots
- Meeting link:
- https://cbiit.webex.com/cbiit/j.php?MTID=m6916d6f765f43c8bf2118659530bf0dd
- Meeting number:
- 2307 014 7918
- Password:
- r3CAK2FAD9?
- Host key:
- 403057
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
-
Dial 23070147918@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
-
1-650-479-3207 Call-in number (US/Canada)Access code: 2307 014 7918Host PIN: 5225
Register Here
Register HereTime
(Wednesday) 11:00 am - 12:00 pm
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
Event Details
Sarah Teichmann, Ph.D., Fellow of the Academy of Medical Sciences (UK FMedSci), Fellow of the Royal Society (FRS), Wellcome Sanger Institute Sarah Teichmann is co-founder and principal leader of the Human
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Event Details
Sarah Teichmann, Ph.D., Fellow of the Academy of Medical Sciences (UK FMedSci), Fellow of the Royal Society (FRS), Wellcome Sanger Institute
Sarah Teichmann is co-founder and principal leader of the Human Cell Atlas (HCA) international consortium. The International Human Cell Atlas initiative aims to create comprehensive reference maps of all human cells to further understand health and disease.
The team’s research focuses on four complementary study areas:
- Transcriptional regulation and gene expression
- Single-cell genomics
- Immunology
- Protein complexes
- Meeting link:
- https://cbiit.webex.com/cbiit/j.php?MTID=mbfca0baa7aa989a895c21f06841884d5
- Meeting number:
- 2303 842 8144
- Password:
- 6yqVRn7dq*7
- Host key:
- 634639
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
-
Dial 23038428144@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
-
1-650-479-3207 Call-in number (US/Canada)Access code: 2303 842 8144Host PIN: 5225
Register Here
Register HereTime
(Thursday) 1:00 pm - 2:00 pm
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
Event Details
We will go over RNA-seq from experimental design, data import options, data normalization options, to to statistical tests and biological interpretation using Gene
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Event Details
- We will go over RNA-seq from experimental design, data import options, data normalization options, to to statistical tests and biological interpretation using Gene Set Enrichment Analysis (GSEA). In this live demo we will build together a signature for separating a disease conditions in a multi-group and two-group analysis.
- Meeting link:
- https://cbiit.webex.com/cbiit/j.php?MTID=m456d47dea218c2604205abc3c723d570
- Meeting number:
- 2309 204 3527
- Password:
- AyKA5SyR$76
- Host key:
- 729640
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
-
Dial 23092043527@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
-
1-650-479-3207 Call-in number (US/Canada)Access code: 2309 204 3527Host PIN: 5225
Register Here
Register HereTime
(Wednesday) 11:00 am - 12:00 pm
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
july
14jul1:00 pm2:00 pmNicholas NavinBTEP Distinguished Speakers Seminar Series
Event Details
Nicholas Navin, Ph.D. Professor, Department of Genetics, Division of Basic Science Research, The University of Texas MD Anderson Cancer Center Grady F. Saunders, Ph.D. Distinguished Professorship
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Event Details
- Professor, Department of Genetics, Division of Basic Science Research, The University of Texas MD Anderson Cancer Center
- Grady F. Saunders, Ph.D. Distinguished Professorship for Molecular Biology, Department of Genetics, The University of Texas MD Anderson Cancer Center
- Professor, The University of Texas, MD Anderson Cancer Center, UT Health Graduate School of Biomedical Sciences
- Director of the CPRIT Single Cell Genomic Center
- Co-Director, Advanced Technology Genomics Core at The University of Texas MD Anderson Cancer Center
- Meeting link:
- https://cbiit.webex.com/cbiit/j.php?MTID=m3d6c312fd01c84f8c197dbe3628fd3fe
- Meeting number:
- 2302 953 7047
- Password:
- JPjyP4YT@32
- Host key:
- 474077
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
-
Dial 23029537047@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
-
1-650-479-3207 Call-in number (US/Canada)Access code: 2302 953 7047Host PIN: 5225
Register Here
Register HereTime
(Thursday) 1:00 pm - 2:00 pm
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov
september
22sep1:00 pm2:00 pmBTEP DSSS: Christopher Mason
Event Details
Christopher E. Mason, Ph.D. Professor of Physiology and Biophysics, Weill Cornell Medicine, New York, NY Director, WorldQuant Initiative for Quantitative Prediction and WorldQuant Foundation Research
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Event Details
Christopher E. Mason, Ph.D.
- Professor of Physiology and Biophysics, Weill Cornell Medicine, New York, NY
- Director, WorldQuant Initiative for Quantitative Prediction and WorldQuant Foundation Research Scholar
- Professor of Computational Genomics in Computational Biomedicine in the Institute for Computational Biomedicine
- Professor of Neuroscience in the Brain and Mind Institute (secondary appointment)
We utilize computational and experimental methodologies to identify and characterize the essential genetic elements that guide the function of the human genome, with a particular emphasis on the elements that orchestrate the development of the human brain. Our lab creates detailed cell-specific molecular maps of genetic, epigenetic, transcriptional, and translational activity, creating a draft of the molecular recipe for the creation of the brain. We also develop methods to detect, catalog and functionally annotate variants in the genetic pathways that control developmental processes and how they are perturbed to create disease. We aim to understand of the functional elements of the human genome well enough to enable, eventually, the ability to repair, re-engineer, or fortify these genetic networks within human cells.
Meeting link:
- https://cbiit.webex.com/cbiit/j.php?MTID=m7bebbef7690ce27f76326ab37d375d3d
- Meeting number:
- 2302 792 7779
- Password:
- JxbcvER$685
- Host key:
- 560701
- Cohost:
- Alex Emmons; Amy Stonelake; Desiree Tillo; Peter Fitzgerald; Joe Wu; Carl McIntosh
- Join by video system
-
Dial 23027927779@cbiit.webex.comYou can also dial 173.243.2.68 and enter your meeting number.
- Join by phone
-
1-650-479-3207 Call-in number (US/Canada)Access code: 2302 792 7779Host PIN: 5225
Register Here
Register HereTime
(Thursday) 1:00 pm - 2:00 pm
Organizer
BTEPBioinformatics Training and Education Program, CCR, NCIncibtep@nih.gov