Course Details

  • Date: May 21st, 2019 - May 21st, 2019
  • Time: 2:00 pm - 5:00 pm
  • Location: Building 37, Room 4041/4107
  • Presenter(s): Mayank Tandon (CCBR), Peter FitzGerald (GAU), Skyler Kuhn (CCBR)

This introductory lecture will provide an overview of RNA-Seq technology, its various application and shortcomings, as well as detailing the steps involved in analyzing the resulting data.
The specific topics covered include:

  1. What is RNASeq ?
  2. What can it be used for ?
  3. Sequencing platforms
  4. Quality Control steps
  5. Experimental Design
  6. Data Analysis Workflows
  7. Identifying differentially expressed genes
  8. Discussion of relevant file formats and data conversion tools
  9. Approaches to detect splice variants and fusion genes
  10. NCI specific tools and software

Followed by: A Practical Guide to Interpreting RNA-Seq Data

Next-generation sequencing (NGS) RNA-seq experiments generate millions of reads per run and problems can arise. Before analyzing the data to draw biological conclusions, it is important to perform quality control checks to minimize the effects of sequencing error, biases in the data, or contamination.  In this talk, we discuss the theory and practice of assessing the quality of RNA-Seq data, as well as analysis strategies for mitigating technical noise using practical examples.

If you are unable to attend in person, the workshop will be available via WebEx and recorded.

BTEP, RNA-Seq Workshop: Intro to RNA-Seq Technology, Overview and Analyses
Hosted by Amy Stonelake

Tuesday, May 21, 2019 2:00 pm | 3 hours | (UTC-05:00) Eastern Time (US & Canada)
Meeting number: 731 553 624
Password: KbQPp4E@
https://cbiit.webex.com/cbiit/j.php?MTID=m1d788955c1d9aa1ec6482aa68335b255

Join by video system
Dial 731553624@cbiit.webex.com
You can also dial 173.243.2.68 and enter your meeting number.

Join by phone
1-650-479-3207 Call-in toll number (US/Canada)
Access code: 731 553 624

Link to WebEx recording:

Streaming recording link:
https://cbiit.webex.com/cbiit/ldr.php?RCID=7d4d2caf8bf8bf0992a12c060113ae9e
Download recording link:
https://cbiit.webex.com/cbiit/lsr.php?RCID=18ec1c00faa1cf372f186442ca83bc4c

 

Course Material 1: PDF icon BTEP_RNASeq_Final_2019.pdf

Course Material 2: PDF icon RNA-seq_BETP_2019rev.pdf