Please note class will start at 10 AM and end at 12 noon. Thank you!
Attention: This class is limited to 28 people due to the size of the room. Please add your name to the waiting list if you would like another training scheduled.
Hands On Training on Bulk RNA-Seq Data Analysis in Partek Flow
Please bring your own computer for this hands-on training. If you need to borrow a computer please email email@example.com
Abstract: Students will learn how to use the point-and-click interface in Partek Flow to go from raw data to experimental results for RNA-Seq analysis:
– Import data from .fastq files
– Perform QA/QC (Pre-alignment QA/QC, Post-alignment QA/QC)
– Trim bases
– Align reads to reference genome
– Quantify gene/transcript abundance
– Normalize gene counts
– Detect differentially expressed genes
– Filter a gene list
– Identify enriched KEGG pathway and/or GO terms
- Heat maps
- Volcano plots
- PCA scatterplot
- Dot plots
- Hierarchical clustering
- Chromosome view
- And more
If you are unable to attend in person, WebEx will be provided.
Meeting number: 738 100 303
Host key: 544130
More ways to join
Join by video system
You can also dial 18.104.22.168 and enter your meeting number.
Join by phone
1-650-479-3207 Call-in number (US/Canada)
Access code: 738 100 303
Course Material 1: PartekFlowRNA-SeqTrainingHandout_November2018-2.pdf
Course Material 2: PartekFlowNewFeatureList_AUG_2019-1.pdf