Course Details

  • Date: December 10th, 2019 - December 10th, 2019
  • Time: 2:30 pm - 4:30 pm
  • Location: Building 37, Room 4041/4107
  • Presenter(s): Emily Tai (NCI), Jiyao Wang (NCBI), Philippe Youkharibache (NCI), Tom Madej (NCBI)

Please bring a laptop. If you need to borrow a laptop please contact ncibtep@nih.gov

No software installation is needed as this program will run on a  web browser.

iCn3D provides a powerful, web-based platform to visualize and analyze proteins complexes in 1D (sequence) and 3D(structure), from single domains through large viruses. This hands-on training is geared towards non-expert users with no to little knowledge in protein structure, or experienced users that do not know iCn3D. We will learn how to use it for 3D visualization, interactive protein structure analysis, visualization of SNPs on 3D structure, and sharing annotations with collaborators.

Agenda:

2:30-3:45,  Hitting the road running on protein structure analysis

4:00-4:30,  Play with the protein of your choice

Reference/Documentation on iCn3D
paper: http://dx.doi.org/10.1093/bioinformatics/btz502
documentation: https://www.ncbi.nlm.nih.gov/Structure/icn3d/docs/icn3d_help.html

If you are unable to attend in person, WebEx will be provided:

https://cbiit.webex.com/cbiit/j.php?MTID=m375cb4351aefde1b93ae4dc3b9dbbfda