Course Details

  • Date: October 3rd, 2019 - October 3rd, 2019
  • Time: 10:00 am - 3:00 pm
  • Location: Building 37, Room 4041/4107
  • Presenter(s): Cihan Oguz (NCBR), Michael Kelly (SCAF), Nathan Wong (CCBR), Vicky Chen (NCBR), Yongmei Zhao (CCR-SF IFX Group)

Overview of single cell technologies, analysis workflows, scRNA-seq preprocessing and QC

10:00 – 10:30 AM Introduction to single cell technologies and applications (Mike Kelly)
10:30 – 11:00 AM Overview of single cell transcriptomic analysis workflow and pipelines (Yongmei Zhao)
11:05 – 12:00 PM scRNA-seq preprocessing and quality control (Vicky Chen, Nathan Wong)
1:00 – 2:00 PM Clustering analysis, dimensionality reduction, marker gene identification, and visualization (Cihan Oguz)
2:00 – 3:00 PM Single cell RNA-seq cell type classification and annotation (Keyur Talsania)

If unable to join in person, WebEx will be provided.

Meeting number (access code): 737 705 057
Meeting password: rPMv3Gf@
Thursday, October 3, 2019
10:00 am  |  (UTC-05:00) Eastern Time (US & Canada)  |  5 hrs
Join by phone
Tap to call in from a mobile device (attendees only)
1-650-479-3207 Call-in toll number (US/Canada)
Join from a video system or application
You can also dial and enter your meeting number.
Join using Microsoft Lync or Microsoft Skype for Business

The link to the WebEx recording of this lecture is here: