Course Details

  • Date: October 3rd, 2019 - October 3rd, 2019
  • Time: 10:00 am - 3:00 pm
  • Location: Building 37, Room 4041/4107
  • Presenter(s): Cihan Oguz (NCBR), Keyur Talsania (CCR-SF IFX Group), Michael Kelly (SCAF), Nathan Wong (CCBR), Vicky Chen (CCR-SF IFX Group), Yongmei Zhao (CCR-SF IFX Group)

Overview of single cell technologies, analysis workflows, scRNA-seq preprocessing and QC

10:00 – 10:30 AM Introduction to single cell technologies and applications (Mike Kelly)
10:30 – 11:00 AM Overview of single cell transcriptomic analysis workflow and pipelines (Yongmei Zhao)
11:05 – 12:00 PM scRNA-seq preprocessing and quality control (Vicky Chen, Nathan Wong)
1:00 – 2:00 PM Clustering analysis, dimensionality reduction, marker gene identification, and visualization (Cihan Oguz)
2:00 – 3:00 PM Single cell RNA-seq cell type classification and annotation (Keyur Talsania)

If unable to join in person, WebEx will be provided.

Meeting number (access code): 737 705 057
Meeting password: rPMv3Gf@
Thursday, October 3, 2019
10:00 am  |  (UTC-05:00) Eastern Time (US & Canada)  |  5 hrs
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The link to the WebEx recording of this lecture is here:

https://cbiit.webex.com/webappng/sites/cbiit/recording/play/c307ef564e4246bba1a7316fed14fea3

Course Material 1: PDF icon 2019-10-03-BTEP-Single-Cell-Analysis-Workshop_MK.pdf

Course Material 2: PDF icon Single-BTEP-Workflow-Pipelne-Overview-Slides-YZ.pdf

Course Material 3: PDF icon 03_WongN_ChenV_Single-Cell-BTEP-QC-Slides.pdf

Course Material 4: PDF icon Single-Cell-BTEP-CO-Slides.pdf

Course Material 5: PDF icon Celltype_Annotation_final.pdf