Course Details

  • Date: April 23rd, 2013 - April 23rd, 2013
  • Time: 2:00 pm - 5:00 pm
  • Location: 6116 Executive Blvd., Room 4075
  • Presenter(s): Alan Berger (JHU)

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes). 
The GSEA software is a Java based tool freely available from the Broad Institute of MIT and Harvard. 
This training class will walk you through getting the most out of this software.
Topics to include:

  • Installing GSEA
  • Required input data files and formats
  • Parameter selection
  • Broad Institute Utilities
  • Understanding the output

 
Tuesday April 16th, 2013 there will be a companion lecture session on GSEA
 
Class Notes
 
Class Data