Course Details

  • Date: October 9th, 2012 - October 9th, 2012
  • Time: 2:00 pm - 5:00 pm
  • Location:
  • Presenter(s):

Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Partek Pathway. As we walk though hands-on analysis of a cancer dataset, you will learn the principles of experimental design, batch correction, statistics, and how to extract biological meaning from the results using tools geneset analyses and pathways.

  • Gene Expression Analysis with Affymetrix (cancer dataset)
  • Good experimental design practices
  • Import CEL files/normalization options
  • Describing sample groups
  • Batch correction
  • Detecting differentially expressed genes/creating a gene list
  • Hierarchical Clustering and other visualizations
  • GO Analysis
  • Pathway Enrichment
  • GeneSet analysis (including Pathway ANOVA)
  • Integration with microRNA 

Course Materials: