Course Details

  • Date: October 23rd, 2019 - October 23rd, 2019
  • Time: 1:30 pm - 3:30 pm
  • Location: Bldg 10 FAES room 4 (B1C205)
  • Presenter(s): Xiaowen Wang (Partek)

Please note class will start at 1:30 PM and end at 3:30 PM. 

Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow

Please bring your own computer for this hands-on training. If you need to borrow a computer please email

Abstract: Students will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow:

– Import data

– Filter cells using interactive QA/QC charts

– Filter and normalize Single Cell RNA-Seq data

– Visualize cell populations using the interactive 3D t-SNE plot

– Overlay gene expression and pathway signatures on the 3D t-SNE plot

– Select and classify cells on the 3D t-SNE plot

– Detect differentially expressed genes

– Filter a gene list

– Identify enriched KEGG pathway and/or GO terms

– Visualize cell-level results using heat maps, volcano plots, and violin plots

If you are unable to attend in person WebEx will be available:

Meeting link:
Meeting number: 737 711 601
Password: Cxjjjq@3
Host key: 696480
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1-650-479-3207 Call-in number (US/Canada)
Access code: 737 711 601