Course Details

  • Date: December 11th, 2019 - December 11th, 2019
  • Time: 1:00 pm - 4:00 pm
  • Location: FAES Room 2 – B1C209
  • Presenter(s): Xiaowen Wang (Partek)

Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow

Please bring your own computer for this hands-on training. If you need to borrow a computer please email ncibtep@nih.gov

Hands on training on the new data visualization tool in Partek Flow – Data Viewer, using a Single Cell RNA-Seq data set as an example. The newly implemented and released Data Viewer in Partek Flow provides more flexible and easy ways to integrate information collected from the data, which helps biologists discover biological meanings.

Agenda:

  • Overview on the new Partek Flow Data Viewer
  • Hand On Session on Single Cell RNA-Seq Analysis using the new Data Viewer
    • Import count matrix
    • Single cell QC
    • Filter and Normalization
    • Dimension reduction (PCA, tSNE, UMAP)
    • Identify subpopulation with newly released Data Viewer
    • Differential expression detection
    • Visualizations (scatterplot, violin plot, volcano plot, box plot, histogram etc.)
    • Biological interpretation
  • Q/A

If you are unable to attend in person WebEx will be available:

Meeting number (access code): 734 351 875
Meeting password: 6JiNF8B@
Wednesday, December 11, 2019
1:00 pm  |  (UTC-05:00) Eastern Time (US & Canada)  |  3 hrs
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Course Material 1: PDF icon PartekFlowTrainingHandout_SingleCell_NewDataViewer.pdf