Listed below are the video recordings of past BTEP events (classes, seminars, workshops).
Videos are hosted on various servers and may play slightly differently.
Some videos may be downloaded for local viewing.
- Melissa Haendel (University of Colorado, Anschutz), Realizing Data Interoperability Across Basic Research, Clinical Care, and Patients
April 21, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=42fa0d8d30fa5d0b53d50d534b060065 - Karen Miga (UC Santa Cruz), Expanding Studies of Centromere Structure and Function in the Era of T2T Genomics
November 4, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=4b56f90d35d1f5cf59fcb6e773cffd83 - Yi Xing (University of Pennsylvania), Computational Tools to Study mRNA Isoform Variation in Cancer
October 26, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=4b04bb2437cb047bd4d3034bbaab1ccc - Neville Sanjana (New York University), New Functional Approaches in Human Cancer Models
October 14, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=0cae5d425e4f4517cd9fbf854f904b50 - Adam Phillippy (NHGRI), Discoveries from the First Truly Complete Sequence of a Human Genome
September 16, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=14e5a64b30e9de41e645697e3ff8b5b1 - Michael Schatz (Johns Hopkins University), Long Read Sequencing for Cancer Genomics and Beyond
June 10, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=a4947355a005414697ff567bc92a03d3 - Elana J. Fertig (Johns Hopkins University), Uncovering Hidden Sources of Transcriptional Dysregulation from Inter and Intra-Tumor Heterogeneity
May 13, 2021
https://web.microsoftstream.com/video/8d0d79cf-cebc-4815-9bd4-f6bf0b389567 - Christina Leslie (Memorial Sloan Kettering Cancer Center), Decoding Chromatin States in T Cell Dysfunction and Modeling Gene Regulation
March 18, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=22aff9b1e11e4298bcbe689e80dd0706 - Stephanie Hicks (Johns Hopkins University), Scalable Statistical Methods and Software for Single-Cell Data Science
January 28, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=50a812337de243a9bfca430ae5d8c1a8 - Peng Jiang (NCI), Data-driven Approaches to Identify the Regulators of the Anticancer Immune Response
July 9, 2020
https://nci.rev.vbrick.com/#/videos/a2b07301-c087-432f-b258-117b9f981d05 - Istvan Albert (Pennsylvania State University), Bioinformatics Recipes: Creating and Sharing Reproducible Data Analysis Workflows
April 23, 2020
https://cbiit.webex.com/cbiit/ldr.php?RCID=d212f383485e4b0341264e14995dbc7b - Sridhar Hannenhalli (NCI), To Function or Not to Function
February 6, 2020
https://cbiit.webex.com/cbiit/ldr.php?RCID=ec72d1923ffe18a82b63ed348b75be0c - Ben Langmead (Johns Hopkins University), Marshaling Public Data for Lean and Powerful Splicing Studies
January 16, 2020
https://cbiit.webex.com/cbiit/ldr.php?RCID=da15d3aface8f25f7f478b9a813f6499 - Max Leiserson (UMD), Methods for Characterizing the Activity of Mutational Processes in Cancer
November 19, 2019
https://btep.ccr.cancer.gov/wp-content/uploads/Max-Leiserson-BTEP.mp4?_=1 - Steven Salzberg (JHU), Distinguished Speakers Seminar Series
October 24, 2019
https://videocast.nih.gov/summary.asp?live=34578
- Data Visualization with R (April 5 – May 10, 2022)
Lesson 6, May 10, 2022 – Combining multiple plots to create a figure panel
https://cbiit.webex.com/cbiit/ldr.php?RCID=890e966d5e6520052426214db0345d96
Lesson 5, May 6, 2022 – Visualizing clusters with heatmaps
https://cbiit.webex.com/cbiit/ldr.php?RCID=4183dc8595b722b9eed9aa32a0e016ef
Lesson 4, April 26, 2022 – Visualizing summary statistics with histograms, bar plots, and box plots
https://cbiit.webex.com/cbiit/ldr.php?RCID=83a227f93612bdc27637783e586d7025
Lesson 3, April 19, 2022 – Scatter plots and ggplot2 customization
https://cbiit.webex.com/cbiit/ldr.php?RCID=ee0789d3b2cb5cc40c77f0d9e8bb3790
Lesson 2, April 12, 2022 – Basics of ggplot2
https://cbiit.webex.com/cbiit/ldr.php?RCID=c2bacdc4f78ef005f1356fb2d8b798c4
Lesson 1, April 5, 2022 – Introduction to plot types
https://cbiit.webex.com/cbiit/ldr.php?RCID=5bfc45c875be766b41f8a9948487a822 - R Introductory Series (February 1 – February 22, 2022)
Lesson 4, February 22, 2022 – Visualize Data in Graphs, Plots and Charts with R (ggplot2)
https://cbiit.webex.com/cbiit/ldr.php?RCID=f2ef31106aef2a6fb9979377dfd0f563
Lesson 3, February 15, 2022 – Working with Tabular Data in R (tidy verse)
https://btep.ccr.cancer.gov/wp-content/uploads/R-class-Lesson-3-2022-02-15-13-04-05.mp4/
Lesson 2, February 8, 2022 – Data Frames and Data Wrangling
https://btep.ccr.cancer.gov/events/r-introductory-series-2022/r-class-lesson-2-2022-02-08-13-03-58-2/
Lesson 1, February 1, 2022 – Introduction to R (Why Learn R?, Getting Started with R and RStudio, R Basics)
https://cbiit.webex.com/cbiit/ldr.php?RCID=db2be53e42f365c74246c02dfc41867b - Publishing your data analysis story with Jupyter Notebook
December 9, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=2a90c0bd794b63a972cf8d7aa4c501b6 - Getting to know R
November 18, 2021
https://cbiit.webex.com/recordingservice/sites/cbiit/recording/playback/b5f1f8622ac7103aaf5f0050568ccf8b - BTEP, Coursera Study Groups: R or Python, Which Should I Learn ?
October 28, 2021
https://cbiit.webex.com/cbiit/ldr.php?RCID=8a3ff4f83125f7946acec6c0f6804dc2 - Bioconductor: Tools and Data Resources for Analysis of High-Throughput Biological Data
December 16, 2020
https://cbiit.webex.com/cbiit/ldr.php?RCID=da0be85f3b8141588e48357d52c94675
- Alex Emmons (BTEP), Introducing QIIME2, a Powerful Platform for Microbiome Analysis
March 24, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=2ad95564340a539395ff3c62e1126ae3 - BTEP bulk RNA-Seq Weeks: Qiagen Ingenuity Pathway Analysis (IPA)
Date
https://cbiit.webex.com/cbiit/ldr.php?RCID=c564ed2d03014ff2bdac5fe2765b7ff1 - Variant Annotation, Visualization and Impact Analysis using AVIA
Date
https://cbiit.webex.com/cbiit/ldr.php?RCID=838671822befaaf2bf504f85a5fb897b
- Virtual Single Cell Town Hall: Single-Cell RNA-Seq Data Analysis
Date
https://nci.rev.vbrick.com/#/webcasts/singlecellpart2 - Virtual Single Cell Town Hall: Experimental Design for Optimal Results in Single-Cell RNA-Seq
Date
https://nci.rev.vbrick.com/#/webcasts/singlecellpart1
- Partek Flow: Bulk and Single Cell Gene Expression Visualization
May 18, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=b5b1948aab3093124275d06fa55b08ae - Qlucore: Import and analyze public data from SRA, GEO and TCGA
May 11, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=c8e8e8ff837caeb2d4d3839bc180b9bb - Training: Access GEO, SRA, ArrayExpress, TCGA, GTEx and more with Qiagen IPA Land Explorer
April 20, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=d081980970fce4cb50dd20d3f4f3e172 - Single Cell RNA-Seq Analysis with Partek Flow
April 13, 2022
https://cbiit.webex.com/cbiit/ldr.php%3FRCID%3D02b734d9f2b8466bf996ccc5d52d0c02 - Qlucore: Pathway Analysis with Gene Set Enrichment Analysis (GSEA)
April 6, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=8cfdd939b601f0402b312ba2f8e85262 - Qlucore: Single Cell Data, from 10x Output to Clustering, Cluster ID and Statistical Analysis in a Visual Qlucore Platform
February 23, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=e5cdeb4d9a3720b6807ab767d78c4e40 - Partek Flow: Variant DNA-Seq Data Analysis
January 19, 2022
https://cbiit.webex.com/cbiit/ldr.php?RCID=95300876cd21dcdf724b34450edf02b7